Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1267_BL-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1267_BL-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1267_BL-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1267_BL-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79691051 total, 56185 skipped (flags/unmapped)
Fragments: 39969333 total (39633834 tlen-paired, 2700 hash-paired, 402 singletons, 11651 discordant, 320746 orphans, 8674 too large [>5000 bp], 15221815 duplicates)
Reads: 85584680 total, 50283 skipped (flags/unmapped)
Fragments: 42931513 total (42574910 tlen-paired, 2655 hash-paired, 497 singletons, 8551 discordant, 344900 orphans, 8384 too large [>5000 bp], 15995494 duplicates)
Reads: 93154945 total, 53725 skipped (flags/unmapped)
Fragments: 46727992 total (46323866 tlen-paired, 3130 hash-paired, 366 singletons, 12848 discordant, 387782 orphans, 16692 too large [>5000 bp], 17857246 duplicates)
Reads: 94631106 total, 96202 skipped (flags/unmapped)
Fragments: 47610596 total (46541724 tlen-paired, 4324 hash-paired, 393 singletons, 210766 discordant, 853389 orphans, 83747 too large [>5000 bp], 18167205 duplicates)