Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_YAG-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_YAG-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_YAG-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_YAG-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84457835 total, 54529 skipped (flags/unmapped)
Fragments: 42310649 total (42057999 tlen-paired, 4280 hash-paired, 408 singletons, 11890 discordant, 236072 orphans, 9244 too large [>5000 bp], 14507484 duplicates)
Reads: 91270974 total, 45211 skipped (flags/unmapped)
Fragments: 45727537 total (45469487 tlen-paired, 3651 hash-paired, 493 singletons, 8624 discordant, 245282 orphans, 8232 too large [>5000 bp], 15393804 duplicates)
Reads: 98911349 total, 49220 skipped (flags/unmapped)
Fragments: 49551440 total (49256537 tlen-paired, 3356 hash-paired, 363 singletons, 12776 discordant, 278408 orphans, 19010 too large [>5000 bp], 17110424 duplicates)
Reads: 99769470 total, 86373 skipped (flags/unmapped)
Fragments: 50070976 total (49365725 tlen-paired, 3660 hash-paired, 395 singletons, 134106 discordant, 567090 orphans, 54315 too large [>5000 bp], 17307584 duplicates)