Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_E2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_E2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_E2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_E2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67452977 total, 51001 skipped (flags/unmapped)
Fragments: 33883585 total (33491327 tlen-paired, 2383 hash-paired, 378 singletons, 10223 discordant, 379274 orphans, 7229 too large [>5000 bp], 13375787 duplicates)
Reads: 72847526 total, 43153 skipped (flags/unmapped)
Fragments: 36608275 total (36173514 tlen-paired, 1918 hash-paired, 390 singletons, 7226 discordant, 425227 orphans, 6720 too large [>5000 bp], 14152843 duplicates)
Reads: 81354691 total, 96196 skipped (flags/unmapped)
Fragments: 41072960 total (39686118 tlen-paired, 3029 hash-paired, 410 singletons, 278678 discordant, 1104725 orphans, 108855 too large [>5000 bp], 16120140 duplicates)
Reads: 79676036 total, 46638 skipped (flags/unmapped)
Fragments: 40033748 total (39545689 tlen-paired, 2795 hash-paired, 337 singletons, 10580 discordant, 474347 orphans, 18293 too large [>5000 bp], 15851431 duplicates)