Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1267_ES-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1267_ES-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_ES-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_ES-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 89301525 total, 62455 skipped (flags/unmapped)
Fragments: 44796620 total (44400479 tlen-paired, 3835 hash-paired, 478 singletons, 14894 discordant, 376934 orphans, 11621 too large [>5000 bp], 18357631 duplicates)
Reads: 94273980 total, 50189 skipped (flags/unmapped)
Fragments: 47303968 total (46889380 tlen-paired, 2770 hash-paired, 528 singletons, 10147 discordant, 401143 orphans, 8763 too large [>5000 bp], 19018936 duplicates)
Reads: 104073135 total, 55905 skipped (flags/unmapped)
Fragments: 52216653 total (51733045 tlen-paired, 6414 hash-paired, 433 singletons, 16004 discordant, 460757 orphans, 22557 too large [>5000 bp], 21486076 duplicates)
Reads: 106145632 total, 104843 skipped (flags/unmapped)
Fragments: 53421100 total (52179034 tlen-paired, 4144 hash-paired, 487 singletons, 244565 discordant, 992870 orphans, 95973 too large [>5000 bp], 21900788 duplicates)