Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_EN-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_EN-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_EN-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_EN-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91078562 total, 63135 skipped (flags/unmapped)
Fragments: 45704650 total (45269922 tlen-paired, 3498 hash-paired, 358 singletons, 15623 discordant, 415249 orphans, 10867 too large [>5000 bp], 18935356 duplicates)
Reads: 97416623 total, 53047 skipped (flags/unmapped)
Fragments: 48897614 total (48434549 tlen-paired, 2609 hash-paired, 488 singletons, 10922 discordant, 449046 orphans, 8941 too large [>5000 bp], 19958118 duplicates)
Reads: 109397843 total, 109240 skipped (flags/unmapped)
Fragments: 55094692 total (53693448 tlen-paired, 3784 hash-paired, 439 singletons, 277337 discordant, 1119684 orphans, 109671 too large [>5000 bp], 22808147 duplicates)
Reads: 107197169 total, 62522 skipped (flags/unmapped)
Fragments: 53800714 total (53266164 tlen-paired, 2931 hash-paired, 391 singletons, 15916 discordant, 515312 orphans, 24461 too large [>5000 bp], 22366584 duplicates)