Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BVJC-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BVJC-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_BVJC-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BVJC-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 106210122 total, 60807 skipped (flags/unmapped)
Fragments: 53243510 total (52845810 tlen-paired, 6535 hash-paired, 387 singletons, 17020 discordant, 373758 orphans, 18220 too large [>5000 bp], 21289137 duplicates)
Reads: 99523295 total, 73746 skipped (flags/unmapped)
Fragments: 49886713 total (49515364 tlen-paired, 5695 hash-paired, 490 singletons, 20189 discordant, 344975 orphans, 10794 too large [>5000 bp], 19802236 duplicates)
Reads: 107906956 total, 57610 skipped (flags/unmapped)
Fragments: 54092618 total (53714264 tlen-paired, 4773 hash-paired, 518 singletons, 14779 discordant, 358284 orphans, 11456 too large [>5000 bp], 21141955 duplicates)
Reads: 117747224 total, 113885 skipped (flags/unmapped)
Fragments: 59130671 total (58159990 tlen-paired, 4205 hash-paired, 536 singletons, 188445 discordant, 777495 orphans, 75014 too large [>5000 bp], 23708832 duplicates)