Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cYX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cYX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cYX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cYX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 92048875 total, 64484 skipped (flags/unmapped)
Fragments: 46142131 total (45799124 tlen-paired, 4510 hash-paired, 546 singletons, 15812 discordant, 322139 orphans, 11407 too large [>5000 bp], 15796187 duplicates)
Reads: 99753291 total, 55113 skipped (flags/unmapped)
Fragments: 50008828 total (49653492 tlen-paired, 4260 hash-paired, 535 singletons, 10520 discordant, 340021 orphans, 10539 too large [>5000 bp], 16857690 duplicates)
Reads: 99295715 total, 55360 skipped (flags/unmapped)
Fragments: 49781474 total (49395808 tlen-paired, 7634 hash-paired, 395 singletons, 13841 discordant, 363796 orphans, 20799 too large [>5000 bp], 17288825 duplicates)
Reads: 110222053 total, 103125 skipped (flags/unmapped)
Fragments: 55376126 total (54384783 tlen-paired, 4707 hash-paired, 514 singletons, 196418 discordant, 789704 orphans, 78447 too large [>5000 bp], 19223380 duplicates)