Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_NH9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_NH9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_NH9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_NH9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80329732 total, 59532 skipped (flags/unmapped)
Fragments: 40359993 total (39879253 tlen-paired, 3341 hash-paired, 414 singletons, 11475 discordant, 465510 orphans, 8069 too large [>5000 bp], 16977219 duplicates)
Reads: 86450942 total, 52298 skipped (flags/unmapped)
Fragments: 43444800 total (42903014 tlen-paired, 2692 hash-paired, 356 singletons, 10480 discordant, 528258 orphans, 18829 too large [>5000 bp], 18266188 duplicates)
Reads: 87073044 total, 51965 skipped (flags/unmapped)
Fragments: 43760281 total (43227607 tlen-paired, 2869 hash-paired, 468 singletons, 8180 discordant, 521157 orphans, 11071 too large [>5000 bp], 17902420 duplicates)
Reads: 96835687 total, 104392 skipped (flags/unmapped)
Fragments: 48897582 total (47214853 tlen-paired, 4093 hash-paired, 429 singletons, 347339 discordant, 1330868 orphans, 133714 too large [>5000 bp], 20389915 duplicates)