Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BQCI-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BQCI-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_BQCI-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BQCI-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74290214 total, 46092 skipped (flags/unmapped)
Fragments: 37244484 total (36968080 tlen-paired, 2652 hash-paired, 305 singletons, 12476 discordant, 260971 orphans, 8215 too large [>5000 bp], 13188446 duplicates)
Reads: 80683686 total, 39905 skipped (flags/unmapped)
Fragments: 40454445 total (40163661 tlen-paired, 2919 hash-paired, 403 singletons, 8852 discordant, 278610 orphans, 6952 too large [>5000 bp], 14080008 duplicates)
Reads: 87707301 total, 42776 skipped (flags/unmapped)
Fragments: 43975236 total (43634879 tlen-paired, 3910 hash-paired, 320 singletons, 12514 discordant, 323613 orphans, 18993 too large [>5000 bp], 15749081 duplicates)
Reads: 89571026 total, 79862 skipped (flags/unmapped)
Fragments: 45010884 total (44187371 tlen-paired, 3501 hash-paired, 378 singletons, 160426 discordant, 659208 orphans, 64491 too large [>5000 bp], 16101023 duplicates)