Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BYI3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BYI3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BYI3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BYI3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68260997 total, 43798 skipped (flags/unmapped)
Fragments: 34201742 total (33988309 tlen-paired, 2482 hash-paired, 310 singletons, 9764 discordant, 200877 orphans, 7451 too large [>5000 bp], 11324165 duplicates)
Reads: 72670945 total, 38685 skipped (flags/unmapped)
Fragments: 36413510 total (36196180 tlen-paired, 2338 hash-paired, 361 singletons, 6778 discordant, 207853 orphans, 6727 too large [>5000 bp], 11876616 duplicates)
Reads: 79422676 total, 39645 skipped (flags/unmapped)
Fragments: 39798475 total (39541443 tlen-paired, 2719 hash-paired, 265 singletons, 9826 discordant, 244222 orphans, 15284 too large [>5000 bp], 13237080 duplicates)
Reads: 80727604 total, 70298 skipped (flags/unmapped)
Fragments: 40526906 total (39912619 tlen-paired, 2178 hash-paired, 304 singletons, 118347 discordant, 493458 orphans, 48628 too large [>5000 bp], 13479160 duplicates)