Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_LPN-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_LPN-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_LPN-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_LPN-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 85162595 total, 48285 skipped (flags/unmapped)
Fragments: 42687188 total (42396795 tlen-paired, 2785 hash-paired, 377 singletons, 14676 discordant, 272555 orphans, 6433 too large [>5000 bp], 14800672 duplicates)
Reads: 92227930 total, 45131 skipped (flags/unmapped)
Fragments: 46224443 total (45929787 tlen-paired, 2202 hash-paired, 453 singletons, 10177 discordant, 281824 orphans, 8095 too large [>5000 bp], 15823278 duplicates)
Reads: 101044613 total, 52102 skipped (flags/unmapped)
Fragments: 50643106 total (50293006 tlen-paired, 4058 hash-paired, 329 singletons, 14519 discordant, 331194 orphans, 18911 too large [>5000 bp], 17774604 duplicates)
Reads: 102373580 total, 85733 skipped (flags/unmapped)
Fragments: 51407861 total (50596874 tlen-paired, 3521 hash-paired, 376 singletons, 155009 discordant, 652081 orphans, 62291 too large [>5000 bp], 18090208 duplicates)