Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_ET-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_ET-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_ET-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_ET-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83940129 total, 47994 skipped (flags/unmapped)
Fragments: 42065762 total (41794926 tlen-paired, 4304 hash-paired, 432 singletons, 10171 discordant, 255929 orphans, 8486 too large [>5000 bp], 14619001 duplicates)
Reads: 93000421 total, 89578 skipped (flags/unmapped)
Fragments: 46689966 total (45974482 tlen-paired, 2820 hash-paired, 391 singletons, 135903 discordant, 576370 orphans, 53836 too large [>5000 bp], 16633685 duplicates)
Reads: 78421523 total, 55040 skipped (flags/unmapped)
Fragments: 39300951 total (39030400 tlen-paired, 3212 hash-paired, 412 singletons, 14830 discordant, 252097 orphans, 8545 too large [>5000 bp], 13783763 duplicates)
Reads: 91780184 total, 50935 skipped (flags/unmapped)
Fragments: 45998078 total (45690793 tlen-paired, 4171 hash-paired, 297 singletons, 14929 discordant, 287888 orphans, 10639 too large [>5000 bp], 16374907 duplicates)