Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_bXS-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bXS-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bXS-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bXS-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93653239 total, 60220 skipped (flags/unmapped)
Fragments: 46934384 total (46619076 tlen-paired, 4999 hash-paired, 396 singletons, 10940 discordant, 298973 orphans, 11810 too large [>5000 bp], 16917205 duplicates)
Reads: 100980964 total, 53843 skipped (flags/unmapped)
Fragments: 50615853 total (50278961 tlen-paired, 5105 hash-paired, 492 singletons, 7490 discordant, 323805 orphans, 9856 too large [>5000 bp], 17876621 duplicates)
Reads: 109030974 total, 56837 skipped (flags/unmapped)
Fragments: 54649790 total (54277890 tlen-paired, 4602 hash-paired, 437 singletons, 10921 discordant, 355940 orphans, 15467 too large [>5000 bp], 19806804 duplicates)
Reads: 111300439 total, 105304 skipped (flags/unmapped)
Fragments: 55919336 total (54914431 tlen-paired, 4380 hash-paired, 506 singletons, 198152 discordant, 801867 orphans, 79418 too large [>5000 bp], 20222586 duplicates)