Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_WRM-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_WRM-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_WRM-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_WRM-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69971387 total, 47330 skipped (flags/unmapped)
Fragments: 35089840 total (34802447 tlen-paired, 3596 hash-paired, 286 singletons, 12704 discordant, 270807 orphans, 7735 too large [>5000 bp], 11987613 duplicates)
Reads: 75691546 total, 39153 skipped (flags/unmapped)
Fragments: 37962550 total (37664255 tlen-paired, 2955 hash-paired, 360 singletons, 8711 discordant, 286269 orphans, 6961 too large [>5000 bp], 12708779 duplicates)
Reads: 82607618 total, 44484 skipped (flags/unmapped)
Fragments: 41428511 total (41084473 tlen-paired, 4273 hash-paired, 313 singletons, 13003 discordant, 326449 orphans, 16437 too large [>5000 bp], 14308266 duplicates)
Reads: 83760958 total, 76841 skipped (flags/unmapped)
Fragments: 42117696 total (41266850 tlen-paired, 3445 hash-paired, 384 singletons, 164598 discordant, 682419 orphans, 65764 too large [>5000 bp], 14530369 duplicates)