Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BLSX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BLSX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_BLSX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BLSX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 85768435 total, 57403 skipped (flags/unmapped)
Fragments: 43010876 total (42658727 tlen-paired, 4515 hash-paired, 467 singletons, 15398 discordant, 331769 orphans, 10758 too large [>5000 bp], 16023948 duplicates)
Reads: 100840543 total, 53444 skipped (flags/unmapped)
Fragments: 50576149 total (50148836 tlen-paired, 6437 hash-paired, 394 singletons, 15473 discordant, 405009 orphans, 20102 too large [>5000 bp], 19020680 duplicates)
Reads: 92128027 total, 47590 skipped (flags/unmapped)
Fragments: 46204547 total (45843485 tlen-paired, 4171 hash-paired, 470 singletons, 10718 discordant, 345703 orphans, 8758 too large [>5000 bp], 16880226 duplicates)
Reads: 102628950 total, 94394 skipped (flags/unmapped)
Fragments: 51604639 total (50559992 tlen-paired, 4167 hash-paired, 409 singletons, 203936 discordant, 836135 orphans, 80911 too large [>5000 bp], 19415456 duplicates)