Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BC3K-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BC3K-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BC3K-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BC3K-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84030055 total, 55222 skipped (flags/unmapped)
Fragments: 42139028 total (41800721 tlen-paired, 2936 hash-paired, 399 singletons, 15340 discordant, 319632 orphans, 8404 too large [>5000 bp], 17085819 duplicates)
Reads: 90047086 total, 48018 skipped (flags/unmapped)
Fragments: 45157854 total (44809787 tlen-paired, 1808 hash-paired, 489 singletons, 10621 discordant, 335149 orphans, 9499 too large [>5000 bp], 17908728 duplicates)
Reads: 99792132 total, 90873 skipped (flags/unmapped)
Fragments: 50163890 total (49185707 tlen-paired, 3265 hash-paired, 448 singletons, 194079 discordant, 780391 orphans, 77159 too large [>5000 bp], 20421944 duplicates)
Reads: 90209959 total, 52087 skipped (flags/unmapped)
Fragments: 45237874 total (44862121 tlen-paired, 4705 hash-paired, 330 singletons, 13240 discordant, 357478 orphans, 19966 too large [>5000 bp], 18400525 duplicates)