Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BBJ3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BBJ3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BBJ3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BBJ3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74493213 total, 53449 skipped (flags/unmapped)
Fragments: 37359463 total (37043399 tlen-paired, 3568 hash-paired, 443 singletons, 14896 discordant, 297157 orphans, 9219 too large [>5000 bp], 13530288 duplicates)
Reads: 79827541 total, 45827 skipped (flags/unmapped)
Fragments: 40041336 total (39693305 tlen-paired, 3141 hash-paired, 350 singletons, 13212 discordant, 331328 orphans, 15360 too large [>5000 bp], 14544593 duplicates)
Reads: 80512122 total, 45740 skipped (flags/unmapped)
Fragments: 40381476 total (40053169 tlen-paired, 3225 hash-paired, 411 singletons, 11062 discordant, 313609 orphans, 8725 too large [>5000 bp], 14315076 duplicates)
Reads: 88634258 total, 86949 skipped (flags/unmapped)
Fragments: 44561295 total (43663769 tlen-paired, 3188 hash-paired, 383 singletons, 177283 discordant, 716672 orphans, 70887 too large [>5000 bp], 16182721 duplicates)