Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BDC9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1241_BDC9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BDC9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai


[W::hts_idx_load3] The index file is older than the data file: 1241_BDC9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91728065 total, 62181 skipped (flags/unmapped)
Fragments: 46011490 total (45614165 tlen-paired, 2980 hash-paired, 501 singletons, 15999 discordant, 377845 orphans, 10625 too large [>5000 bp], 17235993 duplicates)
Reads: 99209062 total, 55157 skipped (flags/unmapped)
Fragments: 49767250 total (49349314 tlen-paired, 3240 hash-paired, 561 singletons, 11363 discordant, 402772 orphans, 11369 too large [>5000 bp], 18275255 duplicates)
Reads: 108311468 total, 58581 skipped (flags/unmapped)
Fragments: 54334188 total (53854185 tlen-paired, 4466 hash-paired, 391 singletons, 17008 discordant, 458138 orphans, 21520 too large [>5000 bp], 20515547 duplicates)
Reads: 110367544 total, 103990 skipped (flags/unmapped)
Fragments: 55523722 total (54302028 tlen-paired, 3987 hash-paired, 434 singletons, 239911 discordant, 977362 orphans, 96953 too large [>5000 bp], 20931651 duplicates)