Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_EO-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_EO-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_EO-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_EO-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78912409 total, 54539 skipped (flags/unmapped)
Fragments: 39547925 total (39275071 tlen-paired, 3650 hash-paired, 365 singletons, 13478 discordant, 255361 orphans, 8873 too large [>5000 bp], 14855374 duplicates)
Reads: 84956001 total, 47082 skipped (flags/unmapped)
Fragments: 42578857 total (42299715 tlen-paired, 3099 hash-paired, 482 singletons, 9676 discordant, 265885 orphans, 8786 too large [>5000 bp], 15715088 duplicates)
Reads: 92807503 total, 49891 skipped (flags/unmapped)
Fragments: 46517736 total (46183650 tlen-paired, 3294 hash-paired, 346 singletons, 14802 discordant, 315644 orphans, 19065 too large [>5000 bp], 17537528 duplicates)
Reads: 93936306 total, 94276 skipped (flags/unmapped)
Fragments: 47167053 total (46411042 tlen-paired, 3357 hash-paired, 355 singletons, 143548 discordant, 608751 orphans, 58515 too large [>5000 bp], 17802251 duplicates)