Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_4V-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_4V-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_4V-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_4V-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87488236 total, 59923 skipped (flags/unmapped)
Fragments: 43849050 total (43539979 tlen-paired, 3609 hash-paired, 454 singletons, 15703 discordant, 289305 orphans, 9986 too large [>5000 bp], 16468256 duplicates)
Reads: 93459099 total, 48349 skipped (flags/unmapped)
Fragments: 46845309 total (46535684 tlen-paired, 3009 hash-paired, 488 singletons, 10296 discordant, 295832 orphans, 8226 too large [>5000 bp], 17332589 duplicates)
Reads: 103825558 total, 96578 skipped (flags/unmapped)
Fragments: 52142341 total (51287901 tlen-paired, 2982 hash-paired, 466 singletons, 162652 discordant, 688340 orphans, 66552 too large [>5000 bp], 19695575 duplicates)
Reads: 102691123 total, 53996 skipped (flags/unmapped)
Fragments: 51472676 total (51098492 tlen-paired, 5466 hash-paired, 387 singletons, 16015 discordant, 352316 orphans, 22239 too large [>5000 bp], 19405067 duplicates)