Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_yG-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_yG-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_yG-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_yG-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70987052 total, 37394 skipped (flags/unmapped)
Fragments: 35592990 total (35323918 tlen-paired, 2107 hash-paired, 239 singletons, 10133 discordant, 256593 orphans, 10255 too large [>5000 bp], 12327188 duplicates)
Reads: 71082773 total, 36039 skipped (flags/unmapped)
Fragments: 35639660 total (35383094 tlen-paired, 2272 hash-paired, 359 singletons, 8194 discordant, 245741 orphans, 6757 too large [>5000 bp], 11997053 duplicates)
Reads: 65773304 total, 42716 skipped (flags/unmapped)
Fragments: 32975785 total (32727465 tlen-paired, 2959 hash-paired, 319 singletons, 11747 discordant, 233295 orphans, 6316 too large [>5000 bp], 11321726 duplicates)
Reads: 79008960 total, 69746 skipped (flags/unmapped)
Fragments: 39696125 total (38982609 tlen-paired, 2909 hash-paired, 306 singletons, 142349 discordant, 567952 orphans, 57611 too large [>5000 bp], 13747849 duplicates)