Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_IHX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_IHX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_IHX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_IHX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 109016068 total, 75055 skipped (flags/unmapped)
Fragments: 54652594 total (54234668 tlen-paired, 4877 hash-paired, 497 singletons, 20620 discordant, 391932 orphans, 14127 too large [>5000 bp], 21827431 duplicates)
Reads: 118358170 total, 62393 skipped (flags/unmapped)
Fragments: 59342462 total (58911507 tlen-paired, 3239 hash-paired, 542 singletons, 15053 discordant, 412121 orphans, 11758 too large [>5000 bp], 23273143 duplicates)
Reads: 117350185 total, 64455 skipped (flags/unmapped)
Fragments: 58836230 total (58390626 tlen-paired, 6000 hash-paired, 426 singletons, 17818 discordant, 421360 orphans, 17528 too large [>5000 bp], 23670812 duplicates)
Reads: 129467630 total, 118180 skipped (flags/unmapped)
Fragments: 65048901 total (63887194 tlen-paired, 3259 hash-paired, 577 singletons, 226768 discordant, 931103 orphans, 91664 too large [>5000 bp], 26151952 duplicates)