Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_6R0-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_6R0-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_6R0-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_6R0-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84785972 total, 57457 skipped (flags/unmapped)
Fragments: 42509242 total (42177419 tlen-paired, 3908 hash-paired, 357 singletons, 15114 discordant, 312444 orphans, 11416 too large [>5000 bp], 14513221 duplicates)
Reads: 92521081 total, 49683 skipped (flags/unmapped)
Fragments: 46387676 total (46047251 tlen-paired, 3192 hash-paired, 481 singletons, 10841 discordant, 325911 orphans, 11219 too large [>5000 bp], 15551696 duplicates)
Reads: 101708264 total, 93659 skipped (flags/unmapped)
Fragments: 51117209 total (50155135 tlen-paired, 5266 hash-paired, 383 singletons, 186043 discordant, 770382 orphans, 75476 too large [>5000 bp], 17654126 duplicates)
Reads: 100023131 total, 53074 skipped (flags/unmapped)
Fragments: 50150934 total (49760690 tlen-paired, 3041 hash-paired, 318 singletons, 15334 discordant, 371551 orphans, 20029 too large [>5000 bp], 17298018 duplicates)