Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dMH-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dMH-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dMH-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dMH-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90673414 total, 69712 skipped (flags/unmapped)
Fragments: 45468282 total (45092323 tlen-paired, 4629 hash-paired, 470 singletons, 16090 discordant, 354770 orphans, 11189 too large [>5000 bp], 16528033 duplicates)
Reads: 98228055 total, 58243 skipped (flags/unmapped)
Fragments: 49263381 total (48871421 tlen-paired, 3888 hash-paired, 557 singletons, 11538 discordant, 375977 orphans, 9792 too large [>5000 bp], 17630236 duplicates)
Reads: 106761603 total, 65014 skipped (flags/unmapped)
Fragments: 53545954 total (53080326 tlen-paired, 6039 hash-paired, 409 singletons, 16930 discordant, 442250 orphans, 23670 too large [>5000 bp], 19659355 duplicates)
Reads: 108783011 total, 117389 skipped (flags/unmapped)
Fragments: 54695365 total (53574060 tlen-paired, 4711 hash-paired, 441 singletons, 217926 discordant, 898227 orphans, 86780 too large [>5000 bp], 20032889 duplicates)