Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BUKR-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BUKR-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BUKR-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BUKR-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Reads: 33701368 total, 36206 skipped (flags/unmapped)
Fragments: 17276658 total (16375890 tlen-paired, 1960 hash-paired, 206 singletons, 2850 discordant, 895752 orphans, 3902 too large [>5000 bp], 8051058 duplicates)
Reads: 36068768 total, 36408 skipped (flags/unmapped)
Fragments: 18519751 total (17495674 tlen-paired, 2128 hash-paired, 308 singletons, 2333 discordant, 1019308 orphans, 6237 too large [>5000 bp], 8413189 duplicates)
Reads: 36336157 total, 33446 skipped (flags/unmapped)
Fragments: 18640321 total (17636245 tlen-paired, 2441 hash-paired, 176 singletons, 2836 discordant, 998623 orphans, 10434 too large [>5000 bp], 8744153 duplicates)
Reads: 43803114 total, 72846 skipped (flags/unmapped)
Fragments: 22997023 total (19370320 tlen-paired, 2499 hash-paired, 310 singletons, 761230 discordant, 2862664 orphans, 299598 too large [>5000 bp], 10055919 duplicates)