Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BL2X-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BL2X-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BL2X-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_BL2X-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70845600 total, 57327 skipped (flags/unmapped)
Fragments: 35511003 total (35237842 tlen-paired, 4080 hash-paired, 373 singletons, 15640 discordant, 253068 orphans, 9854 too large [>5000 bp], 11720614 duplicates)
Reads: 75657936 total, 48501 skipped (flags/unmapped)
Fragments: 37928221 total (37640220 tlen-paired, 4298 hash-paired, 253 singletons, 13146 discordant, 270304 orphans, 11775 too large [>5000 bp], 12586210 duplicates)
Reads: 76105277 total, 47966 skipped (flags/unmapped)
Fragments: 38147308 total (37875127 tlen-paired, 3820 hash-paired, 358 singletons, 11164 discordant, 256839 orphans, 9946 too large [>5000 bp], 12396440 duplicates)
Reads: 83626221 total, 81581 skipped (flags/unmapped)
Fragments: 41995802 total (41307763 tlen-paired, 3079 hash-paired, 299 singletons, 131900 discordant, 552761 orphans, 53048 too large [>5000 bp], 13957773 duplicates)