Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_IYZ-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_IYZ-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_IYZ-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_IYZ-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 58473431 total, 38218 skipped (flags/unmapped)
Fragments: 29297415 total (29111701 tlen-paired, 2784 hash-paired, 264 singletons, 9085 discordant, 173581 orphans, 7114 too large [>5000 bp], 10104580 duplicates)
Reads: 63838417 total, 31744 skipped (flags/unmapped)
Fragments: 31989804 total (31796081 tlen-paired, 1967 hash-paired, 286 singletons, 6781 discordant, 184689 orphans, 6020 too large [>5000 bp], 10863481 duplicates)
Reads: 68602539 total, 36079 skipped (flags/unmapped)
Fragments: 34378012 total (34149894 tlen-paired, 2380 hash-paired, 290 singletons, 9672 discordant, 215776 orphans, 13251 too large [>5000 bp], 11917380 duplicates)
Reads: 69233762 total, 62716 skipped (flags/unmapped)
Fragments: 34755695 total (34238344 tlen-paired, 2829 hash-paired, 315 singletons, 97364 discordant, 416843 orphans, 38407 too large [>5000 bp], 12057127 duplicates)