Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_bV5-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bV5-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bV5-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bV5-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87872291 total, 56225 skipped (flags/unmapped)
Fragments: 44034999 total (43747157 tlen-paired, 2953 hash-paired, 395 singletons, 13829 discordant, 270665 orphans, 8564 too large [>5000 bp], 15656536 duplicates)
Reads: 94935176 total, 51078 skipped (flags/unmapped)
Fragments: 47576561 total (47258665 tlen-paired, 5942 hash-paired, 378 singletons, 12146 discordant, 299430 orphans, 15392 too large [>5000 bp], 17090303 duplicates)
Reads: 95027793 total, 53192 skipped (flags/unmapped)
Fragments: 47618650 total (47321439 tlen-paired, 4015 hash-paired, 431 singletons, 9447 discordant, 283318 orphans, 10525 too large [>5000 bp], 16623890 duplicates)
Reads: 105183845 total, 89508 skipped (flags/unmapped)
Fragments: 52808632 total (51996818 tlen-paired, 4385 hash-paired, 465 singletons, 158688 discordant, 648276 orphans, 62907 too large [>5000 bp], 18990819 duplicates)