Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BDD6-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BDD6-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BDD6-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BDD6-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71266316 total, 48288 skipped (flags/unmapped)
Fragments: 35729943 total (35456607 tlen-paired, 3389 hash-paired, 358 singletons, 12329 discordant, 257260 orphans, 7880 too large [>5000 bp], 12630419 duplicates)
Reads: 76494652 total, 40636 skipped (flags/unmapped)
Fragments: 38354469 total (38072448 tlen-paired, 3270 hash-paired, 397 singletons, 8171 discordant, 270183 orphans, 7829 too large [>5000 bp], 13279404 duplicates)
Reads: 85414567 total, 77837 skipped (flags/unmapped)
Fragments: 42929983 total (42124042 tlen-paired, 1804 hash-paired, 408 singletons, 155647 discordant, 648082 orphans, 62627 too large [>5000 bp], 15261050 duplicates)
Reads: 84055550 total, 43166 skipped (flags/unmapped)
Fragments: 42146635 total (41817234 tlen-paired, 2726 hash-paired, 329 singletons, 12705 discordant, 313641 orphans, 16542 too large [>5000 bp], 14983618 duplicates)