Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BGZE-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BGZE-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BGZE-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BGZE-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 99482777 total, 66499 skipped (flags/unmapped)
Fragments: 49875163 total (49497083 tlen-paired, 4760 hash-paired, 546 singletons, 17216 discordant, 355558 orphans, 11028 too large [>5000 bp], 19005003 duplicates)
Reads: 106860093 total, 57010 skipped (flags/unmapped)
Fragments: 53574334 total (53188728 tlen-paired, 3753 hash-paired, 633 singletons, 11916 discordant, 369304 orphans, 12176 too large [>5000 bp], 20062711 duplicates)
Reads: 117444716 total, 59720 skipped (flags/unmapped)
Fragments: 58884862 total (58439194 tlen-paired, 5220 hash-paired, 453 singletons, 17644 discordant, 422351 orphans, 19038 too large [>5000 bp], 22603195 duplicates)
Reads: 119563222 total, 104761 skipped (flags/unmapped)
Fragments: 60082447 total (58989387 tlen-paired, 2943 hash-paired, 536 singletons, 212416 discordant, 877165 orphans, 85634 too large [>5000 bp], 23067470 duplicates)