Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BIBL-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BIBL-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BIBL-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BIBL-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96634194 total, 66926 skipped (flags/unmapped)
Fragments: 48427092 total (48091240 tlen-paired, 5055 hash-paired, 459 singletons, 18881 discordant, 311457 orphans, 12500 too large [>5000 bp], 18603369 duplicates)
Reads: 103724581 total, 56948 skipped (flags/unmapped)
Fragments: 51985585 total (51628480 tlen-paired, 5930 hash-paired, 403 singletons, 15714 discordant, 335058 orphans, 15962 too large [>5000 bp], 20142802 duplicates)
Reads: 103874343 total, 53191 skipped (flags/unmapped)
Fragments: 52060365 total (51722582 tlen-paired, 3876 hash-paired, 504 singletons, 13781 discordant, 319622 orphans, 10274 too large [>5000 bp], 19689901 duplicates)
Reads: 113803864 total, 101270 skipped (flags/unmapped)
Fragments: 57130314 total (56269862 tlen-paired, 5217 hash-paired, 501 singletons, 164399 discordant, 690335 orphans, 66401 too large [>5000 bp], 22194653 duplicates)