Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_0EP-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_0EP-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_0EP-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_0EP-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72326127 total, 49797 skipped (flags/unmapped)
Fragments: 36249805 total (35992667 tlen-paired, 3286 hash-paired, 355 singletons, 13580 discordant, 239917 orphans, 8496 too large [>5000 bp], 12954406 duplicates)
Reads: 77145727 total, 42178 skipped (flags/unmapped)
Fragments: 38666392 total (38409198 tlen-paired, 2760 hash-paired, 419 singletons, 9705 discordant, 244310 orphans, 7747 too large [>5000 bp], 13587585 duplicates)
Reads: 84343859 total, 47151 skipped (flags/unmapped)
Fragments: 42273129 total (41974900 tlen-paired, 4507 hash-paired, 353 singletons, 13484 discordant, 279885 orphans, 15344 too large [>5000 bp], 15182257 duplicates)
Reads: 85230405 total, 82048 skipped (flags/unmapped)
Fragments: 42798877 total (42111950 tlen-paired, 3610 hash-paired, 363 singletons, 129588 discordant, 553366 orphans, 52166 too large [>5000 bp], 15371995 duplicates)