Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BRB0-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BRB0-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BRB0-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BRB0-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69667514 total, 50165 skipped (flags/unmapped)
Fragments: 34902327 total (34683271 tlen-paired, 3575 hash-paired, 296 singletons, 11836 discordant, 203349 orphans, 8170 too large [>5000 bp], 12074689 duplicates)
Reads: 74479623 total, 38623 skipped (flags/unmapped)
Fragments: 37317360 total (37099226 tlen-paired, 2762 hash-paired, 361 singletons, 7902 discordant, 207109 orphans, 6875 too large [>5000 bp], 12674847 duplicates)
Reads: 81112659 total, 45068 skipped (flags/unmapped)
Fragments: 40639216 total (40379556 tlen-paired, 4539 hash-paired, 237 singletons, 11736 discordant, 243148 orphans, 16272 too large [>5000 bp], 14126243 duplicates)
Reads: 82122923 total, 74846 skipped (flags/unmapped)
Fragments: 41212628 total (40633115 tlen-paired, 3386 hash-paired, 360 singletons, 109494 discordant, 466273 orphans, 44727 too large [>5000 bp], 14353948 duplicates)