Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dNu-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dNu-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dNu-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dNu-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 127725457 total, 92058 skipped (flags/unmapped)
Fragments: 63987627 total (63592756 tlen-paired, 6731 hash-paired, 562 singletons, 22611 discordant, 364967 orphans, 11837 too large [>5000 bp], 25940452 duplicates)
Reads: 140991167 total, 82076 skipped (flags/unmapped)
Fragments: 70631565 total (70223839 tlen-paired, 7847 hash-paired, 644 singletons, 15616 discordant, 383619 orphans, 15112 too large [>5000 bp], 28454817 duplicates)
Reads: 149930137 total, 85711 skipped (flags/unmapped)
Fragments: 75113724 total (74652952 tlen-paired, 7630 hash-paired, 529 singletons, 22270 discordant, 430343 orphans, 23925 too large [>5000 bp], 30895935 duplicates)
Reads: 151964252 total, 142667 skipped (flags/unmapped)
Fragments: 76251772 total (75211354 tlen-paired, 8050 hash-paired, 622 singletons, 195487 discordant, 836259 orphans, 77461 too large [>5000 bp], 31416234 duplicates)