Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_cck-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_cck-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.baiThe index file is older than the data file: 659_cck-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 659_cck-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90440101 total, 60445 skipped (flags/unmapped)
Fragments: 45354556 total (44985661 tlen-paired, 2748 hash-paired, 425 singletons, 11885 discordant, 353837 orphans, 12403 too large [>5000 bp], 16345547 duplicates)
Reads: 97799555 total, 50921 skipped (flags/unmapped)
Fragments: 49059068 total (48662603 tlen-paired, 2745 hash-paired, 467 singletons, 8132 discordant, 385121 orphans, 8043 too large [>5000 bp], 17333701 duplicates)
Reads: 108998481 total, 104408 skipped (flags/unmapped)
Fragments: 54840290 total (53614694 tlen-paired, 3178 hash-paired, 455 singletons, 244565 discordant, 977398 orphans, 95673 too large [>5000 bp], 19821822 duplicates)
Reads: 107021525 total, 56620 skipped (flags/unmapped)
Fragments: 53682304 total (53220679 tlen-paired, 5532 hash-paired, 396 singletons, 12226 discordant, 443471 orphans, 22082 too large [>5000 bp], 19461106 duplicates)