Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_e2p-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e2p-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e2p-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_e2p-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86701688 total, 56993 skipped (flags/unmapped)
Fragments: 43471014 total (43134431 tlen-paired, 4620 hash-paired, 411 singletons, 14834 discordant, 316718 orphans, 9898 too large [>5000 bp], 15349823 duplicates)
Reads: 93655332 total, 47261 skipped (flags/unmapped)
Fragments: 46960778 total (46617406 tlen-paired, 3355 hash-paired, 417 singletons, 10418 discordant, 329182 orphans, 8057 too large [>5000 bp], 16346243 duplicates)
Reads: 103826898 total, 92068 skipped (flags/unmapped)
Fragments: 52189306 total (51192682 tlen-paired, 3717 hash-paired, 421 singletons, 193521 discordant, 798965 orphans, 77802 too large [>5000 bp], 18615522 duplicates)
Reads: 102379881 total, 53014 skipped (flags/unmapped)
Fragments: 51335353 total (50941303 tlen-paired, 3552 hash-paired, 424 singletons, 15011 discordant, 375063 orphans, 15824 too large [>5000 bp], 18309786 duplicates)