Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BI61-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BI61-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BI61-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_BI61-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77229791 total, 53524 skipped (flags/unmapped)
Fragments: 38707179 total (38436185 tlen-paired, 2773 hash-paired, 350 singletons, 12760 discordant, 255111 orphans, 8685 too large [>5000 bp], 14208295 duplicates)
Reads: 82840397 total, 45268 skipped (flags/unmapped)
Fragments: 41522029 total (41242086 tlen-paired, 3818 hash-paired, 433 singletons, 8894 discordant, 266798 orphans, 9151 too large [>5000 bp], 14986498 duplicates)
Reads: 90687548 total, 48225 skipped (flags/unmapped)
Fragments: 45457686 total (45142188 tlen-paired, 3894 hash-paired, 353 singletons, 13331 discordant, 297920 orphans, 11112 too large [>5000 bp], 16738458 duplicates)
Reads: 91416249 total, 82827 skipped (flags/unmapped)
Fragments: 45917908 total (45147377 tlen-paired, 2400 hash-paired, 399 singletons, 146865 discordant, 620867 orphans, 59436 too large [>5000 bp], 16924389 duplicates)