Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BZWC-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BZWC-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BZWC-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BZWC-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73591484 total, 51469 skipped (flags/unmapped)
Fragments: 36967686 total (36543039 tlen-paired, 3225 hash-paired, 401 singletons, 10087 discordant, 410934 orphans, 7989 too large [>5000 bp], 15218934 duplicates)
Reads: 79096816 total, 46970 skipped (flags/unmapped)
Fragments: 39745032 total (39274625 tlen-paired, 3033 hash-paired, 461 singletons, 6912 discordant, 460001 orphans, 10122 too large [>5000 bp], 16013603 duplicates)
Reads: 87163091 total, 48289 skipped (flags/unmapped)
Fragments: 43793148 total (43265627 tlen-paired, 3572 hash-paired, 335 singletons, 10619 discordant, 512995 orphans, 20918 too large [>5000 bp], 18071413 duplicates)
Reads: 89374112 total, 94827 skipped (flags/unmapped)
Fragments: 45127903 total (43600958 tlen-paired, 3901 hash-paired, 377 singletons, 308717 discordant, 1213950 orphans, 118903 too large [>5000 bp], 18431842 duplicates)