Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_IN7-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_IN7-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_IN7-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_IN7-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84599837 total, 54039 skipped (flags/unmapped)
Fragments: 42415673 total (42098539 tlen-paired, 3508 hash-paired, 477 singletons, 13590 discordant, 299559 orphans, 7244 too large [>5000 bp], 14837139 duplicates)
Reads: 90900842 total, 47167 skipped (flags/unmapped)
Fragments: 45574581 total (45246714 tlen-paired, 3451 hash-paired, 443 singletons, 9535 discordant, 314438 orphans, 9697 too large [>5000 bp], 15656505 duplicates)
Reads: 98678706 total, 49539 skipped (flags/unmapped)
Fragments: 49478021 total (49098729 tlen-paired, 7364 hash-paired, 347 singletons, 13943 discordant, 357638 orphans, 15555 too large [>5000 bp], 17412128 duplicates)
Reads: 100702543 total, 93668 skipped (flags/unmapped)
Fragments: 50609335 total (49664217 tlen-paired, 4089 hash-paired, 412 singletons, 184020 discordant, 756597 orphans, 73607 too large [>5000 bp], 17805446 duplicates)