Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_QV9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_QV9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_QV9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_QV9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76672142 total, 53811 skipped (flags/unmapped)
Fragments: 38473920 total (38109281 tlen-paired, 3200 hash-paired, 338 singletons, 14844 discordant, 346257 orphans, 8543 too large [>5000 bp], 13435161 duplicates)
Reads: 82589254 total, 44965 skipped (flags/unmapped)
Fragments: 41445893 total (41067719 tlen-paired, 2377 hash-paired, 436 singletons, 10342 discordant, 365019 orphans, 8979 too large [>5000 bp], 14250506 duplicates)
Reads: 89775854 total, 47806 skipped (flags/unmapped)
Fragments: 45055276 total (44617539 tlen-paired, 2725 hash-paired, 327 singletons, 15330 discordant, 419355 orphans, 18589 too large [>5000 bp], 15866182 duplicates)
Reads: 91315434 total, 89542 skipped (flags/unmapped)
Fragments: 45971858 total (44863188 tlen-paired, 2793 hash-paired, 380 singletons, 216091 discordant, 889406 orphans, 85981 too large [>5000 bp], 16141531 duplicates)