Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_15R-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_15R-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_15R-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_15R-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 37265269 total, 39255 skipped (flags/unmapped)
Fragments: 19120864 total (18087700 tlen-paired, 2502 hash-paired, 191 singletons, 3022 discordant, 1027449 orphans, 5963 too large [>5000 bp], 9013730 duplicates)
Reads: 38765694 total, 36025 skipped (flags/unmapped)
Fragments: 19932458 total (18784127 tlen-paired, 1608 hash-paired, 241 singletons, 2434 discordant, 1144048 orphans, 4521 too large [>5000 bp], 9207877 duplicates)
Reads: 39825020 total, 34759 skipped (flags/unmapped)
Fragments: 20451843 total (19316220 tlen-paired, 2135 hash-paired, 158 singletons, 2685 discordant, 1130645 orphans, 8689 too large [>5000 bp], 9812948 duplicates)
Reads: 48174101 total, 75231 skipped (flags/unmapped)
Fragments: 25332270 total (21203884 tlen-paired, 1466 hash-paired, 364 singletons, 871116 discordant, 3255440 orphans, 345067 too large [>5000 bp], 11283581 duplicates)