Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_C2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_C2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_C2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_C2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86465121 total, 59373 skipped (flags/unmapped)
Fragments: 43332840 total (43033695 tlen-paired, 4164 hash-paired, 457 singletons, 14803 discordant, 279721 orphans, 10123 too large [>5000 bp], 16019175 duplicates)
Reads: 92069921 total, 49623 skipped (flags/unmapped)
Fragments: 46143717 total (45843985 tlen-paired, 3833 hash-paired, 481 singletons, 9907 discordant, 285511 orphans, 9428 too large [>5000 bp], 16775938 duplicates)
Reads: 100753793 total, 52224 skipped (flags/unmapped)
Fragments: 50499213 total (50144526 tlen-paired, 5546 hash-paired, 392 singletons, 14352 discordant, 334397 orphans, 18966 too large [>5000 bp], 18760475 duplicates)
Reads: 102185830 total, 89890 skipped (flags/unmapped)
Fragments: 51317420 total (50486793 tlen-paired, 4333 hash-paired, 416 singletons, 157946 discordant, 667932 orphans, 64724 too large [>5000 bp], 19075322 duplicates)