Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cuv-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_cuv-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_cuv-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cuv-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 110379657 total, 72291 skipped (flags/unmapped)
Fragments: 55383875 total (54869993 tlen-paired, 5319 hash-paired, 501 singletons, 16985 discordant, 491077 orphans, 15597 too large [>5000 bp], 21449178 duplicates)
Reads: 118346246 total, 63863 skipped (flags/unmapped)
Fragments: 59392087 total (58848018 tlen-paired, 4827 hash-paired, 658 singletons, 12751 discordant, 525833 orphans, 12350 too large [>5000 bp], 22555130 duplicates)
Reads: 117880056 total, 63227 skipped (flags/unmapped)
Fragments: 59160416 total (58584479 tlen-paired, 5111 hash-paired, 439 singletons, 15179 discordant, 555208 orphans, 25822 too large [>5000 bp], 23049400 duplicates)
Reads: 131745474 total, 115161 skipped (flags/unmapped)
Fragments: 66330273 total (64697787 tlen-paired, 5970 hash-paired, 511 singletons, 330567 discordant, 1295438 orphans, 132858 too large [>5000 bp], 25747400 duplicates)