Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_w6-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.baiThe index file is older than the data file: 659_w6-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_w6-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_w6-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80521746 total, 58450 skipped (flags/unmapped)
Fragments: 40339661 total (40091406 tlen-paired, 4095 hash-paired, 368 singletons, 12976 discordant, 230816 orphans, 7579 too large [>5000 bp], 12821964 duplicates)
Reads: 86929483 total, 52391 skipped (flags/unmapped)
Fragments: 43557768 total (43278206 tlen-paired, 4885 hash-paired, 315 singletons, 11605 discordant, 262757 orphans, 12314 too large [>5000 bp], 14038101 duplicates)
Reads: 88201699 total, 48695 skipped (flags/unmapped)
Fragments: 44188515 total (43934042 tlen-paired, 3645 hash-paired, 429 singletons, 9210 discordant, 241189 orphans, 8796 too large [>5000 bp], 13841777 duplicates)
Reads: 95967808 total, 86642 skipped (flags/unmapped)
Fragments: 48154039 total (47489432 tlen-paired, 4113 hash-paired, 407 singletons, 128972 discordant, 531115 orphans, 52305 too large [>5000 bp], 15579554 duplicates)