Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BUK5-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BUK5-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BUK5-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_BUK5-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 51388485 total, 40043 skipped (flags/unmapped)
Fragments: 25849002 total (25479069 tlen-paired, 2166 hash-paired, 324 singletons, 6125 discordant, 361318 orphans, 6040 too large [>5000 bp], 9796487 duplicates)
Reads: 55776558 total, 34357 skipped (flags/unmapped)
Fragments: 28064799 total (27652996 tlen-paired, 1881 hash-paired, 202 singletons, 5677 discordant, 404043 orphans, 8424 too large [>5000 bp], 10639689 duplicates)
Reads: 56054166 total, 34895 skipped (flags/unmapped)
Fragments: 28209666 total (27789115 tlen-paired, 2282 hash-paired, 344 singletons, 4808 discordant, 413117 orphans, 6700 too large [>5000 bp], 10423162 duplicates)
Reads: 62501837 total, 75367 skipped (flags/unmapped)
Fragments: 31645190 total (30274694 tlen-paired, 2392 hash-paired, 330 singletons, 285054 discordant, 1082720 orphans, 109570 too large [>5000 bp], 11818213 duplicates)