Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BQT4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BQT4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BQT4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BQT4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74996022 total, 53138 skipped (flags/unmapped)
Fragments: 37594063 total (37317491 tlen-paired, 3822 hash-paired, 285 singletons, 12800 discordant, 259665 orphans, 7354 too large [>5000 bp], 14255676 duplicates)
Reads: 80856489 total, 47367 skipped (flags/unmapped)
Fragments: 40533316 total (40220396 tlen-paired, 4122 hash-paired, 279 singletons, 11386 discordant, 297133 orphans, 19951 too large [>5000 bp], 15441916 duplicates)
Reads: 82034939 total, 44826 skipped (flags/unmapped)
Fragments: 41124037 total (40836862 tlen-paired, 2818 hash-paired, 363 singletons, 9678 discordant, 274316 orphans, 8359 too large [>5000 bp], 15273218 duplicates)
Reads: 89404739 total, 87358 skipped (flags/unmapped)
Fragments: 44904414 total (44124249 tlen-paired, 4255 hash-paired, 298 singletons, 152979 discordant, 622633 orphans, 65742 too large [>5000 bp], 17097670 duplicates)