Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BB20-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BB20-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BB20-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BB20-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai



Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73483681 total, 53813 skipped (flags/unmapped)
Fragments: 36831951 total (36565324 tlen-paired, 3870 hash-paired, 360 singletons, 13111 discordant, 249286 orphans, 7806 too large [>5000 bp], 13241088 duplicates)
Reads: 79362449 total, 45363 skipped (flags/unmapped)
Fragments: 39777606 total (39506719 tlen-paired, 3311 hash-paired, 374 singletons, 8822 discordant, 258380 orphans, 10314 too large [>5000 bp], 14081998 duplicates)
Reads: 87929911 total, 87536 skipped (flags/unmapped)
Fragments: 44160754 total (43416403 tlen-paired, 4297 hash-paired, 327 singletons, 142157 discordant, 597570 orphans, 59382 too large [>5000 bp], 16000342 duplicates)
Reads: 86594180 total, 49471 skipped (flags/unmapped)
Fragments: 43405722 total (43076128 tlen-paired, 6419 hash-paired, 282 singletons, 13340 discordant, 309553 orphans, 21550 too large [>5000 bp], 15725968 duplicates)