Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_QH5-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_QH5-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_QH5-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_QH5-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 95259068 total, 69279 skipped (flags/unmapped)
Fragments: 47761731 total (47382115 tlen-paired, 3792 hash-paired, 505 singletons, 14487 discordant, 360832 orphans, 13832 too large [>5000 bp], 20310874 duplicates)
Reads: 103257894 total, 57023 skipped (flags/unmapped)
Fragments: 51785491 total (51380507 tlen-paired, 3411 hash-paired, 540 singletons, 10248 discordant, 390785 orphans, 10607 too large [>5000 bp], 21611438 duplicates)
Reads: 102500224 total, 60745 skipped (flags/unmapped)
Fragments: 51406155 total (50956220 tlen-paired, 6901 hash-paired, 334 singletons, 13549 discordant, 429151 orphans, 28327 too large [>5000 bp], 21909711 duplicates)
Reads: 113609657 total, 110891 skipped (flags/unmapped)
Fragments: 57120451 total (55950859 tlen-paired, 3590 hash-paired, 415 singletons, 233784 discordant, 931803 orphans, 95041 too large [>5000 bp], 24311993 duplicates)