Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_WRN-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_WRN-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_WRN-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_WRN-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81223103 total, 56723 skipped (flags/unmapped)
Fragments: 40718670 total (40411394 tlen-paired, 3862 hash-paired, 323 singletons, 14318 discordant, 288773 orphans, 9068 too large [>5000 bp], 15284381 duplicates)
Reads: 87982517 total, 52744 skipped (flags/unmapped)
Fragments: 44108653 total (43769467 tlen-paired, 6450 hash-paired, 264 singletons, 12497 discordant, 319975 orphans, 16353 too large [>5000 bp], 16645651 duplicates)
Reads: 88186786 total, 48620 skipped (flags/unmapped)
Fragments: 44209556 total (43896498 tlen-paired, 3078 hash-paired, 435 singletons, 10396 discordant, 299149 orphans, 9319 too large [>5000 bp], 16313145 duplicates)
Reads: 96657842 total, 90534 skipped (flags/unmapped)
Fragments: 48557378 total (47703248 tlen-paired, 3824 hash-paired, 383 singletons, 166308 discordant, 683615 orphans, 68275 too large [>5000 bp], 18340682 duplicates)