Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BGV4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BGV4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BGV4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BGV4-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 110097651 total, 79455 skipped (flags/unmapped)
Fragments: 55194393 total (54773049 tlen-paired, 4601 hash-paired, 525 singletons, 17727 discordant, 398491 orphans, 14213 too large [>5000 bp], 24260703 duplicates)
Reads: 117907891 total, 69670 skipped (flags/unmapped)
Fragments: 59115406 total (58677907 tlen-paired, 5747 hash-paired, 562 singletons, 12559 discordant, 418631 orphans, 13301 too large [>5000 bp], 25680598 duplicates)
Reads: 131749082 total, 124006 skipped (flags/unmapped)
Fragments: 66219165 total (64961358 tlen-paired, 3705 hash-paired, 426 singletons, 243648 discordant, 1010028 orphans, 98600 too large [>5000 bp], 29282062 duplicates)
Reads: 129996642 total, 74748 skipped (flags/unmapped)
Fragments: 65172808 total (64661873 tlen-paired, 4455 hash-paired, 375 singletons, 17924 discordant, 488181 orphans, 32417 too large [>5000 bp], 28842482 duplicates)